Yes, Alli works on AMP Pages.

Self-Optimizing SEO will work on any website, including AMP Pages!

How do you install it?

Though you normally install the Alli code snippet in your site's <head>, in this case, you will need to paste the JavaScript snippet inside the <body> </body> tags of your AMP Pages.

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How to Set Your Focus Keyword?
How is a Focus Keyword selected?
What happens when you change your Focus Keyword?

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